Duplications and de novo deletions of the SMNt gene demonstrated by fluorescence-based carrier testing for spinal muscular atrophy.

TitleDuplications and de novo deletions of the SMNt gene demonstrated by fluorescence-based carrier testing for spinal muscular atrophy.
Publication TypeJournal Article
Year of Publication1999
AuthorsChen KL, Wang YL, Rennert H, Joshi I, Mills JK, Leonard DG, Wilson RB
JournalAm J Med Genet
Date Published1999 Aug 27
KeywordsCentromere, Chromosomes, Human, Pair 5, Crossing Over, Genetic, Cyclic AMP Response Element-Binding Protein, DNA, Exons, Female, Gene Deletion, Gene Duplication, Genetic Carrier Screening, Genetic Linkage, Genetic Markers, Genotype, Humans, Male, Muscular Atrophy, Spinal, Nerve Tissue Proteins, Pedigree, Polymerase Chain Reaction, RNA-Binding Proteins, SMN Complex Proteins, Survival of Motor Neuron 1 Protein, Survival of Motor Neuron 2 Protein

Approximately 95% of individuals with spinal muscular atrophy (SMA) lack both copies of the SMNt gene at 5q13. The presence of a nearly identical centromeric homolog of the SMNt gene, SMNc, necessitates a quantitative polymerase chain reaction approach to direct carrier testing. Adapting a radioactivity-based method described previously, multiplex polymerase chain reaction was performed using fluorescently labeled primers followed by analysis on an ABI 373a DNA sequencer. The SMNt copy number was calculated from ratios of peak areas using both internal and genomic standards. Samples from 60 presumed carriers (50 parents of affected individuals and 10 relatives implicated by linkage analysis) and 40 normal control individuals were tested. Normalized results (to the mean of five or more control samples harboring two copies of the SMNt gene) were consistently within the ranges of 0.4 to 0.6 for carriers (one copy) and 0.8 to 1.2 for normal controls (two copies), without overlap. Combining linkage analyses with direct carrier test results demonstrated de novo deletions associated with crossovers, unaffected individuals carrying two SMNt gene copies on one chromosome and zero SMNt gene copies on the other chromosome, and unaffected individuals with three copies of the SMNt gene. This report demonstrates that fluorescence-based carrier testing for SMA is accurate, reproducible, and useful for genetic risk assessment, and that carrier testing may need to be combined with linkage analysis in certain circumstances.

Alternate JournalAm J Med Genet
PubMed ID10405443
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