The ZSWIM8 ubiquitin ligase mediates target-directed microRNA degradation.

TitleThe ZSWIM8 ubiquitin ligase mediates target-directed microRNA degradation.
Publication TypeJournal Article
Year of Publication2020
AuthorsShi CY, Kingston ER, Kleaveland B, Lin DH, Stubna MW, Bartel DP
JournalScience
Volume370
Issue6523
Date Published2020 12 18
ISSN1095-9203
KeywordsAnimals, Argonaute Proteins, Caenorhabditis elegans, Caenorhabditis elegans Proteins, Drosophila, Drosophila Proteins, Elongin, Gene Knockdown Techniques, Humans, K562 Cells, Mice, MicroRNAs, NIH 3T3 Cells, Proteolysis, RNA Stability, RNA, Long Noncoding, Ubiquitin-Protein Ligases
Abstract

MicroRNAs (miRNAs) associate with Argonaute (AGO) proteins to direct widespread posttranscriptional gene repression. Although association with AGO typically protects miRNAs from nucleases, extensive pairing to some unusual target RNAs can trigger miRNA degradation. We found that this target-directed miRNA degradation (TDMD) required the ZSWIM8 Cullin-RING E3 ubiquitin ligase. This and other findings support a mechanistic model of TDMD in which target-directed proteolysis of AGO by the ubiquitin-proteasome pathway exposes the miRNA for degradation. Moreover, loss-of-function studies indicated that the ZSWIM8 Cullin-RING ligase accelerates degradation of numerous miRNAs in cells of mammals, flies, and nematodes, thereby specifying the half-lives of most short-lived miRNAs. These results elucidate the mechanism of TDMD and expand its inferred role in shaping miRNA levels in bilaterian animals.

DOI10.1126/science.abc9359
Alternate JournalScience
PubMed ID33184237
PubMed Central IDPMC8356967
Grant ListR35 GM118135 / GM / NIGMS NIH HHS / United States
/ HHMI / Howard Hughes Medical Institute / United States
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Benjamin Kleaveland, M.D., Ph.D.

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