Pathology & Laboratory Medicine

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Faculty Publications

Recently Added Publications:

Ancillary testing strategies in salivary gland aspiration cytology: A practical pattern-based approach

Momin Siddiqui, MD

Ancillary testing strategies in salivary gland aspiration cytology: A practical pattern-based approach

Diagn Cytopathol. 2017 Apr 14. [Epub ahead of print] 

Griffith CC, Siddiqui MT, Schmitt AC.

PMID: 28411379

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Modeling complex cancer rearrangement landscapes

Marcin Imielinski, MD, PhD

Modeling complex cancer rearrangement landscapes

Current Opinion in Systems Biology. 2016 Dec 26 [Epub ahead of print]

Maciejowski  J, Imielinski M. 

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Insertions and Deletions Target Lineage-Defining Genes in Human Cancers

Marcin Imielinski, MD, PhD

Insertions and Deletions Target Lineage-Defining Genes in Human Cancers

Cell. 2017 Jan 26;168(3):460-472.

Imielinski M, Guo G, Meyerson M.

PMID: 28089356

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The cancer precision medicine knowledge base for structured clinical-grade mutations and interpretations

Marcin Imielinski, MD, PhD

The cancer precision medicine knowledge base for structured clinical-grade mutations and interpretations

J Am Med Inform Assoc. 2016 Oct 27. [Epub ahead of print]

Huang L, Fernandes H, Zia H, Tavassoli P, Rennert H, Pisapia D, Imielinski M, Sboner A, Rubin MA, Kluk M, Elemento O.

PMID: 27789569

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Chromatin Kinases Act on Transcription Factors and Histone Tails in Regulation of Inducible Transcription

Steven Josefowicz, PhD

Chromatin Kinases Act on Transcription Factors and Histone Tails in Regulation of Inducible Transcription

Mol Cell. 2016 Oct 20;64(2):347-361. 

Josefowicz SZ*, Shimada M*, Armache A, Li CH, Miller RM, Lin S, Yang A, Dill BD, Molina H, Park HS, Garcia BA, Taunton J, Roeder RG, Allis CD.

PMID: 27768872; PMCID: PMC5081221.

*equal contribution

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MYB expression: Potential role in separating adenoid cystic carcinoma (ACC) from pleomorphic adenoma (PA)

Momin Siddiqui, MD

MYB expression: Potential role in separating adenoid cystic carcinoma (ACC) from pleomorphic adenoma (PA)

Diagn Cytopathol. 2016 Oct;44(10):799-804.

Moon A, Cohen C, Siddiqui MT.

PMID: 27491495

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Stromal PD-L1 Expression Is Associated With Better Disease-Free Survival in Triple-Negative Breast Cancer

Momin Siddiqui, MD

Stromal PD-L1 Expression Is Associated With Better Disease-Free Survival in Triple-Negative Breast Cancer

Am J Clin Pathol. 2016 Oct;146(4):496-502. 

Li X, Wetherilt CS, Krishnamurti U, Yang J, Ma Y, Styblo TM, Meisel JL, Peng L, Siddiqui MT, Cohen C, Aneja R.

PMID: 27686176

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High-throughput Phenotyping of Lung Cancer Somatic Mutations

Marcin Imielinski, MD, PhD

High-throughput Phenotyping of Lung Cancer Somatic Mutations

Cancer Cell2016 Aug 8;30(2):214-28.

Berger AH, Brooks AN, Wu X, Shrestha Y, Chouinard C, Piccioni F, Bagul M, Kamburov A, Imielinski M, Hogstrom L, Zhu C, Yang X, Pantel S, Sakai R, Watson J, Kaplan N, Campbell JD, Singh S, Root DE, Narayan R, Natoli T, Lahr DL, Tirosh I, Tamayo P, Getz G, Wong B, Doench J, Subramanian A, Golub TR, Meyerson M, Boehm JS.

PMID: 27478040; PMCID: PMC5003022

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Pediatric Patient Blood Management: Not Just Transfusing Little Adults Transfusion Medicine Reviews 2016

Ruchika Goel, MD

Pediatric Patient Blood Management: Not Just Transfusing Little Adults Transfusion Medicine Reviews 2016

Goel R, Cushing MM, Tobian AAR.

(in press)

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Greater Than the Sum of Parts: Complexity of the Dynamic Epigenome

Steven Josefowicz, PhD

Greater Than the Sum of Parts: Complexity of the Dynamic Epigenome

Mol Cell. 2016 Jun 2;62(5):681-94. 

Soshnev AA, Josefowicz SZ, Allis CD.

PMID: 27259201; PMCID: PMC4898265

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Distinct patterns of somatic genome alterations in lung adenocarcinomas and squamous cell carcinomas

Marcin Imielinski, MD, PhD

Distinct patterns of somatic genome alterations in lung adenocarcinomas and squamous cell carcinomas

Nat Genet. 2016 Jun;48(6):607-16. 

Campbell JD, Alexandrov A, Kim J, Wala J, Berger AH, Pedamallu CS, Shukla SA, Guo G, Brooks AN, Murray BA, Imielinski M, Hu X, Ling S, Akbani R, Rosenberg M, Cibulskis C, Ramachandran A, Collisson EA, Kwiatkowski DJ, Lawrence MS, Weinstein JN, Verhaak RG, Wu CJ, Hammerman PS, Cherniack AD, Getz G; Cancer Genome Atlas Research Network., Artyomov MN, Schreiber R, Govindan R, Meyerson M.

PMID: 27158780; PMCID: PMC4884143

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Whole exome sequencing in recurrent early pregnancy loss

Jiadi Wen, MD, PhD

Whole exome sequencing in recurrent early pregnancy loss

Mol Hum Reprod. 2016 May;22(5):364-72.

Qiao Y, Wen J, Tang F, Martell S, Shomer N, Leung PC, Stephenson MD, Rajcan-Separovic E.

PMID: 26826164; PMCID: PMC4847612

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Expanded Geographic Distribution and Clinical Characteristics of Ehrlichia ewingii Infections, United States

Rebecca Millar Harris, MD

Expanded Geographic Distribution and Clinical Characteristics of Ehrlichia ewingii Infections, United States

Emerg Infect Dis. 2016 May;22(5):862-5.

Harris RM, Couturier BA, Sample SC, Coulter KS, Casey KK, Schlaberg R.

PMID: 27089171; PMCID: PMC4861533

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Red blood cells stored 35 days or more are associated with adverse outcomes in high-risk patients

Ruchika Goel, MD

Red blood cells stored 35 days or more are associated with adverse outcomes in high-risk patients

Transfusion. 2016 Apr 8. [Epub ahead of print]  

Goel R, Johnson DJ, Scott AV, Tobian AA, Ness PM, Nagababu E, Frank SM.

PMID: 27062463

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Identifying candidate genes for 2p15p16.1 microdeletion syndrome using clinical, genomic, and functional analysis

Jiadi Wen, MD, PhD

Identifying candidate genes for 2p15p16.1 microdeletion syndrome using clinical, genomic, and functional analysis

JCI Insight. 2016 Mar 17;1(3):e85461. 

Bagheri H, Badduke C, Qiao Y, Colnaghi R, Abramowicz I, Alcantara D, Dunham C, Wen J, Wildin RS, Nowaczyk MJ, Eichmeyer J, Lehman A, Maranda B, Martell S, Shan X, Lewis SM, O'Driscoll M, Gregory-Evans CY, Rajcan-Separovic E.

PMID: 27699255; PMCID: PMC5033885

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PLAG1: An Immunohistochemical Marker with Limited Utility in Separating Pleomorphic Adenoma from Other Basaloid Salivary Gland Tumors

Momin Siddiqui, MD

PLAG1: An Immunohistochemical Marker with Limited Utility in Separating Pleomorphic Adenoma from Other Basaloid Salivary Gland Tumors

Acta Cytol. 2016;60(3):240-5. 

Avadhani V, Cohen C, Siddiqui MT. 

PubMed PMID: 27463119

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Utility of microbiological testing of thoracic lymph nodes sampled by endobronchial ultrasound-guided transbronchial needle aspiration (EBUS-TBNA) in patients with mediastinal lymphadenopathy

Rebecca Millar Harris, MD

Utility of microbiological testing of thoracic lymph nodes sampled by endobronchial ultrasound-guided transbronchial needle aspiration (EBUS-TBNA) in patients with mediastinal lymphadenopathy

Diagn Microbiol Infect Dis. 2016 Feb;84(2):170-4.

Harris RM, Arnaout R, Koziel H, Folch E, Majid A, Kirby JE.

PMID: 26602949

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Identification of focally amplified lineage-specific super-enhancers in human epithelial cancers

Marcin Imielinski, MD, PhD

Identification of focally amplified lineage-specific super-enhancers in human epithelial cancers

Nat Genet. 2016 Feb;48(2):176-82. 

Zhang X, Choi PS, Francis JM, Imielinski M, Watanabe H, Cherniack AD, Meyerson M.

PMID: 26656844; PMCID: PMC4857881

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Utility of GATA3, mammaglobin, GCDFP-15, and ER in the detection of intrathoracic metastatic breast carcinoma

Abha Goyal, MD

Utility of GATA3, mammaglobin, GCDFP-15, and ER in the detection of intrathoracic metastatic breast carcinoma

J Am Soc Cytopathol. 2015 4(4): 218-224

Dyhdalo KS, Booth CN, Brainard JA, Croyle MC, Kolosiwsky AM, Goyal A, Gildea TR, Almeida FA, Nassar A, Reynolds JP

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Functional regulation of FoxO1 in neural stem cell differentiation

Ji-Hye Paik, PhD

Functional regulation of FoxO1 in neural stem cell differentiation

Cell Death Differ. 2015 Oct 16. [Epub ahead of print] 

Kim DY, Hwang I, Muller FL, Paik JH.

PMID: 26470727

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